usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 22.657 6.8365 17.503 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1407 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 902 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 274, nonpolar: 292, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.72285 31.87641 -3.02722 16.82060 7.51924 27.49492 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 522 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 457 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 445 Spheres center of coords (x y z): 22.4304309662921 9.17600337078651 17.7561442247191 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.18939709088659 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 20