usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 21.984175 7.195875 13.5081
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2103
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1198
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1178
Number of spheres polar: 407, nonpolar: 418, out of current total: 1178
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.98623 30.92452 -2.68721 17.17316 3.51745 23.48608
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 698
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 587
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 565
Spheres center of coords (x y z): 21.4621563008849 9.24248024778761 14.5623739469027
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.721679061973
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 40