usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 29.107125 10.010125 21.144375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 758 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 588 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 588 Number of spheres polar: 237, nonpolar: 221, out of current total: 588 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.37532 36.61473 4.07957 19.48418 11.26448 31.09580 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 133 Spheres center of coords (x y z): 26.3430003759399 10.0224182706767 20.7423952631579 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87979527364573 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 8