usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 40.8855833333333 18.3030833333333 30.3090833333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 316
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 263
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 263
Number of spheres polar: 101, nonpolar: 112, out of current total: 263
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.09355 50.37687 8.43897 25.00234 20.48911 38.36508
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 152
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 135
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 93
Spheres center of coords (x y z): 44.2536752688172 15.1997531182796 27.8952750537634
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.3265976220236
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 12