usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -37.8689285714286 5.25257142857143 11.1037857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1095 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 858 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 857 Number of spheres polar: 286, nonpolar: 293, out of current total: 857 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -47.86744 -28.25805 -4.63437 15.21008 1.12596 21.07021 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 472 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 414 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 372 Spheres center of coords (x y z): -38.9697300537635 7.51337752688172 10.9560123655914 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.680388402361 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 14