usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -32.5294285714286 -24.7147857142857 11.3210714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 390 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 230 WARNING: removing a crystallographic sphere that is distance 7.02323465363361 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 7.60432515085987 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 8.98559653000289 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 9.8608414448261 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 9.31213004634278 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 225 Number of spheres polar: 118, nonpolar: 58, out of current total: 225 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -42.46209 -24.89178 -25.92800 -14.72192 1.48988 19.73759 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 95 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 78 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 43 Final number of output spheres is: 43 Number of polar spheres: 17 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 9