usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): -35.2918823529412 5.79676470588235 14.8446470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 955 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 953 Number of spheres polar: 321, nonpolar: 360, out of current total: 953 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -45.19537 -26.12351 -3.87451 15.55115 4.90198 24.82925 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 494 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 424 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 384 Spheres center of coords (x y z): -38.2844567708333 7.783709453125 13.4763917447917 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77811774193991 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 17