usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 20.4748 4.26973333333333 10.5689333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1141 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 890 Number of spheres polar: 317, nonpolar: 254, out of current total: 890 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.47637 30.36201 -5.69274 14.25476 0.62323 20.42384 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 423 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 367 Spheres center of coords (x y z): 20.0051492098093 6.84172945504087 10.1304629700273 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.52305083996227 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 15