usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 21.8644230769231 7.16346153846154 29.9869230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1374 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 904 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891 Number of spheres polar: 341, nonpolar: 315, out of current total: 891 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.14288 31.81660 -1.60099 16.90313 20.00016 39.96328 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 307 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 238 Spheres center of coords (x y z): 23.7760783193277 7.73841298319328 30.5540709663865 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14293020437962 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 26