usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 80.837 5.00878260869565 31.2915652173913 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1067 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 687 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 682 Number of spheres polar: 169, nonpolar: 253, out of current total: 682 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 70.86084 90.80563 -4.79599 14.99525 21.30481 41.29073 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 259 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 196 Spheres center of coords (x y z): 84.3498455102041 7.10418938775511 32.6158092346939 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.31763339875413 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 23