usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 15.51 20.2058235294118 7.62741176470588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1596 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 899 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 233, nonpolar: 420, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.04352 25.47923 10.28677 30.11700 -2.37124 17.04359 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 499 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 449 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 428 Spheres center of coords (x y z): 15.1244189719626 22.0470111448598 6.04957189252336 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.7309835181633 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 17