usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 16.9992631578947 22.419 23.9701052631579 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1332 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 912 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 912 Number of spheres polar: 291, nonpolar: 351, out of current total: 912 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.01912 26.97147 12.56645 32.35060 14.00094 33.94584 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 491 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 428 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 417 Spheres center of coords (x y z): 16.1650814388489 23.8925766906475 23.050150911271 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.36196976599712 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 19