DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-4-31.c.bkslab.org 13-Mar-12 14:16:21 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_lig_ampc_0001.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1646970 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 60.29100 -14.95100 9.651001 grid max 102.7910 18.04900 49.65100 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 50 0 0 0 0 0 36 non-zero colors in receptor sphere cluster cluster 1 with 50 spheres 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 maximum receptor sphere-sphere distance 10.46588 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C03881288 16552 6401885 20 8 14965.7 15.25 E C03881288 2 -99.50 -13.51 55.73 -1.55 -58.83 2 C03881288 16785 9497168 20 8 17323.3 17.23 E C03881288 2 -96.70 -21.62 62.52 -1.84 -57.64 3 C03881284 27429 16132352 24 144 9018.5 28.01 E C03881284 3 -81.74 -22.38 46.70 -2.96 -60.37 4 C03881284 6332 6533041 24 48 6829.2 10.22 E C03881284 3 -100.29 -25.16 62.08 -2.07 -65.45 5 C03881284 18959 7287241 24 24 4329.7 15.23 E C03881284 2 -78.81 -19.81 45.70 -2.97 -55.88 6 C03855713 16821 8881760 19 8 15706.2 14.64 E C03855713 2 -97.91 -17.19 57.03 -1.26 -59.32 7 C03855713 7964 3410694 19 8 4583.0 7.30 E C03855713 2 -97.13 -17.33 56.77 -1.34 -59.03 8 C03881291 2822 1128762 21 6 1778.9 2.66 E C03881291 2 -76.46 -18.28 27.58 -0.83 -67.99 9 C03881291 7964 3485958 21 6 5432.4 8.38 E C03881291 2 -74.15 -19.66 26.56 -0.85 -68.11 10 C03881289 39421 21580911 19 24 29302.6 40.74 E C03881289 2 -90.04 -19.20 29.34 -1.05 -80.95 11 C03881289 6332 5738322 19 48 8975.9 9.01 E C03881289 3 -92.80 -22.05 29.47 -0.87 -86.25 12 C03881292 9013 5580405 21 24 4488.3 9.89 E C03881292 2 -87.42 -16.33 47.29 -1.81 -58.27 13 C03881292 7964 5732087 21 24 3976.0 8.25 E C03881292 2 -124.36 -13.27 84.07 -2.62 -56.19 14 C03881283 16104 13344640 22 46 13866.9 17.80 E C03881283 3 -102.57 -20.54 57.44 -0.32 -65.98 15 C03881283 6322 7831227 22 46 7018.7 9.36 E C03881283 3 -103.15 -22.32 56.89 -0.41 -69.00 16 C03881290 14496 7430702 19 8 14620.5 12.25 E C03881290 2 -97.75 -17.53 57.09 -1.26 -59.45 17 C03881290 7964 3395304 19 8 8128.6 7.30 E C03881290 2 -96.72 -17.87 56.86 -1.13 -58.85 18 C01809738 17424 14640490 17 52 21569.4 21.64 E C01809738 2 -75.02 -9.71 24.97 0.10 -59.65 19 C03881299 8979 4773313 21 16 853.3 8.79 E C03881299 2 -89.41 -14.97 31.59 0.44 -72.35 20 C03881299 4423 3066498 21 16 205.0 4.51 E C03881299 2 -89.97 -17.18 31.16 0.23 -75.76 21 C03881284 19761 8447903 24 90 2347.3 17.69 E C03881284 3 -81.70 -25.92 26.35 -2.01 -83.28 22 C03881284 6332 5040578 24 36 6713.6 9.06 E C03881284 3 -80.85 -27.58 26.45 -1.96 -83.93 23 C03881284 18962 5116603 24 18 7076.4 13.52 E C03881284 2 -80.53 -27.14 26.29 -2.02 -83.40 24 C03881286 10687 3136973 20 12 4694.6 8.41 E C03881286 2 -104.46 -20.58 57.09 -1.12 -69.07 25 C03881286 7572 3627989 20 12 5971.2 9.64 E C03881286 2 -105.09 -21.20 56.99 -1.17 -70.46 26 C03881294 2877 2400704 22 32 2479.1 3.57 E C03881294 3 -92.51 -14.55 47.01 -1.09 -61.14 27 C03881294 7964 5431369 22 32 2011.2 8.13 E C03881294 2 -89.63 -14.95 49.22 -1.39 -56.75 28 C03881293 12408 8648958 22 24 10198.5 15.29 E C03881293 2 -91.93 -17.09 48.96 -2.14 -62.20 29 C03881293 7976 5511695 22 24 2800.2 8.00 E C03881293 2 -91.86 -16.20 48.83 -2.07 -61.31 30 C03865054 21690 5165573 19 8 7219.3 12.69 E C03865054 3 -67.56 -19.36 30.23 -2.94 -59.63 31 C03865054 10189 2447288 19 4 4415.4 4.62 E C03865054 2 -63.58 -18.88 27.83 -3.22 -57.84 32 C03881282 17424 12765452 15 26 26197.9 19.48 E C03881282 2 -78.01 -18.97 27.47 -2.45 -71.96 33 C03881285 13732 14307524 19 50 11678.4 18.15 E C03881285 3 -95.60 -23.76 54.37 -1.60 -66.59 34 C03881285 6815 4762118 19 25 4603.5 8.91 E C03881285 2 -102.60 -18.46 61.91 -1.24 -60.39 35 C03881291 5984 3202488 21 8 5327.0 5.68 E C03881291 2 -95.13 -11.47 49.79 -1.72 -58.54 36 C03881291 7964 3090269 21 8 1896.1 7.33 E C03881291 2 -90.18 -15.57 51.21 -2.00 -56.54 37 C03881287 20327 11083911 19 8 16713.4 18.80 E C03881287 2 -91.62 -14.20 30.61 0.50 -74.71 38 C03881287 4423 1845075 19 8 3559.0 4.09 E C03881287 2 -91.89 -13.82 30.57 0.51 -74.64 39 C03881288 16543 6448759 20 6 15958.1 15.72 E C03881288 2 -78.56 -14.46 25.02 -1.40 -69.39 40 C03881288 10036 3437081 20 6 3421.8 8.47 E C03881288 2 -76.13 -15.35 24.41 -1.35 -68.42 41 C03881297 22034 12995255 20 18 7005.3 21.46 E C03881297 2 -106.27 -22.00 60.02 -1.50 -69.75 42 C03881297 6332 6501116 20 36 3782.9 7.39 E C03881297 3 -105.86 -22.17 59.77 -1.52 -69.78 43 C03881294 1658 1362602 22 28 629.8 2.08 E C03881294 3 -80.03 -17.41 28.73 -0.64 -69.35 44 C03881294 6332 6251011 22 56 8175.0 8.15 E C03881294 3 -96.83 -20.25 33.69 0.48 -82.91 45 C03881296 31684 20497442 21 36 19609.5 29.44 E C03881296 3 -91.64 -21.11 54.38 -1.26 -59.63 46 C03881296 6331 6409181 21 36 7635.7 7.82 E C03881296 3 -106.05 -21.14 61.97 -1.19 -66.41 47 C03881284 14477 4158174 24 12 3320.0 10.96 E C03881284 2 -90.14 -23.39 44.33 -1.80 -70.99 48 C03881284 6321 5049963 24 24 6235.7 9.08 E C03881284 3 -90.85 -22.75 44.19 -1.81 -71.23 49 C03881284 14469 4168529 24 12 3248.8 10.96 E C03881284 2 -88.82 -22.19 43.42 -1.74 -69.32 50 C03881295 8884 5495797 21 24 7293.6 9.72 E C03881295 2 -102.34 -21.64 59.09 -1.37 -66.26 51 C03881295 7970 4823511 21 24 3809.9 8.54 E C03881295 2 -102.24 -21.93 59.01 -1.40 -66.56 52 C03881298 6383 5153410 21 396 8267.2 8.10 E C03881298 3 -47.50 -21.10 21.77 -1.44 -48.27 53 C03881298 22057 15646756 21 48 27589.7 24.95 E C03881298 2 -48.29 -23.16 24.06 -1.44 -48.84 54 C03881285 13732 14035833 19 50 14569.7 18.26 E C03881285 3 -92.89 -17.32 31.10 -0.85 -79.96 55 C03881285 4312 2739013 19 25 5096.8 5.26 E C03881285 2 -76.42 -21.12 26.63 -0.89 -71.81 56 C03881286 7006 1621980 20 12 2495.0 4.54 E C03881286 2 -73.31 -17.90 30.56 -0.92 -61.56 57 C03881286 4203 1767207 20 12 2240.6 4.86 E C03881286 2 -75.58 -20.53 29.44 -1.26 -67.93 EOF: /raid3/people/mysinger/pxc/dude/original/dud_lig_ampc_0001.db.gz end of file encountered total minimization steps = 48668849 for debugging, time = 678.9300 solvation corrected scores: (a) 1 C03881289 score: -86.253 nathvy = 19 nconfs = 48 2 C03881284 score: -83.935 nathvy = 24 nconfs = 36 3 C03881284 score: -83.404 nathvy = 24 nconfs = 18 4 C03881284 score: -83.281 nathvy = 24 nconfs = 90 5 C03881294 score: -82.905 nathvy = 22 nconfs = 56 6 C03881289 score: -80.948 nathvy = 19 nconfs = 24 7 C03881285 score: -79.962 nathvy = 19 nconfs = 50 8 C03881299 score: -75.761 nathvy = 21 nconfs = 16 9 C03881287 score: -74.706 nathvy = 19 nconfs = 8 10 C03881287 score: -74.642 nathvy = 19 nconfs = 8 11 C03881299 score: -72.347 nathvy = 21 nconfs = 16 12 C03881282 score: -71.959 nathvy = 15 nconfs = 26 13 C03881285 score: -71.808 nathvy = 19 nconfs = 25 14 C03881284 score: -71.231 nathvy = 24 nconfs = 24 15 C03881284 score: -70.990 nathvy = 24 nconfs = 12 16 C03881286 score: -70.462 nathvy = 20 nconfs = 12 17 C03881297 score: -69.777 nathvy = 20 nconfs = 36 18 C03881297 score: -69.749 nathvy = 20 nconfs = 18 19 C03881288 score: -69.392 nathvy = 20 nconfs = 6 20 C03881294 score: -69.354 nathvy = 22 nconfs = 28 21 C03881284 score: -69.324 nathvy = 24 nconfs = 12 22 C03881286 score: -69.068 nathvy = 20 nconfs = 12 23 C03881283 score: -68.996 nathvy = 22 nconfs = 46 24 C03881288 score: -68.422 nathvy = 20 nconfs = 6 25 C03881291 score: -68.105 nathvy = 21 nconfs = 6 26 C03881291 score: -67.993 nathvy = 21 nconfs = 6 27 C03881286 score: -67.930 nathvy = 20 nconfs = 12 28 C03881285 score: -66.589 nathvy = 19 nconfs = 50 29 C03881295 score: -66.563 nathvy = 21 nconfs = 24 30 C03881296 score: -66.405 nathvy = 21 nconfs = 36 31 C03881295 score: -66.255 nathvy = 21 nconfs = 24 32 C03881283 score: -65.981 nathvy = 22 nconfs = 46 33 C03881284 score: -65.449 nathvy = 24 nconfs = 48 34 C03881293 score: -62.205 nathvy = 22 nconfs = 24 35 C03881286 score: -61.564 nathvy = 20 nconfs = 12 36 C03881293 score: -61.306 nathvy = 22 nconfs = 24 37 C03881294 score: -61.141 nathvy = 22 nconfs = 32 38 C03881285 score: -60.389 nathvy = 19 nconfs = 25 39 C03881284 score: -60.372 nathvy = 24 nconfs = 144 40 C01809738 score: -59.653 nathvy = 17 nconfs = 52 41 C03881296 score: -59.633 nathvy = 21 nconfs = 36 42 C03865054 score: -59.631 nathvy = 19 nconfs = 8 43 C03881290 score: -59.450 nathvy = 19 nconfs = 8 44 C03855713 score: -59.316 nathvy = 19 nconfs = 8 45 C03855713 score: -59.033 nathvy = 19 nconfs = 8 46 C03881290 score: -58.852 nathvy = 19 nconfs = 8 47 C03881288 score: -58.834 nathvy = 20 nconfs = 8 48 C03881291 score: -58.535 nathvy = 21 nconfs = 8 49 C03881292 score: -58.267 nathvy = 21 nconfs = 24 50 C03865054 score: -57.840 nathvy = 19 nconfs = 4 51 C03881288 score: -57.642 nathvy = 20 nconfs = 8 52 C03881294 score: -56.747 nathvy = 22 nconfs = 32 53 C03881291 score: -56.543 nathvy = 21 nconfs = 8 54 C03881292 score: -56.185 nathvy = 21 nconfs = 24 55 C03881284 score: -55.885 nathvy = 24 nconfs = 24 56 C03881298 score: -48.836 nathvy = 21 nconfs = 48 57 C03881298 score: -48.271 nathvy = 21 nconfs = 396 Date and Time: 13-Mar-12 14:27:45 elapsed time (sec): 678.9700