usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 27.4740714285714 10.7514285714286 20.1044285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 830 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 670 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 670 Number of spheres polar: 256, nonpolar: 257, out of current total: 670 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.52452 36.66573 3.59603 20.52853 10.39512 30.04012 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 153 Spheres center of coords (x y z): 25.5684720915033 10.4427765359477 20.1503583660131 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98982986948413 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 14