usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -27.1386190476191 31.3935714285714 4.32647619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 928 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 316 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 316 Number of spheres polar: 111, nonpolar: 165, out of current total: 316 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -37.12894 -17.88666 21.39709 38.48028 -5.28944 14.30045 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 114 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 81 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 57 Spheres center of coords (x y z): -27.4333350877193 31.7890629824561 4.53749 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.86707286675297 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 21