There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.7668571428571 2.3387619047619 4.63190476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12545 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 6796 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 6796 Number of spheres polar: 3785, nonpolar: 2397, out of current total: 6796 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.77100 38.76140 -9.65700 14.33820 -7.35740 16.62900 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 994 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 319 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 118 Final number of output spheres is: 118 Number of polar spheres: 44 Number of nonpolar spheres: 63 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21