usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 27.1871904761905 2.45095238095238 3.90652380952381
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1048
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 324
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 324
Number of spheres polar: 111, nonpolar: 174, out of current total: 324
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.48591 37.18636 -7.44100 12.37725 -5.80502 13.71587
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 147
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 123
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 81
Spheres center of coords (x y z): 27.2385312345679 2.14317975308642 3.80923987654321
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.74932577332155
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 21