usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 27.4624642857143 2.89678571428571 5.43028571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1105 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 543 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 543 Number of spheres polar: 182, nonpolar: 323, out of current total: 543 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.39467 37.31395 -4.35821 12.89300 -4.54004 15.41778 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 134 Spheres center of coords (x y z): 28.2285591791045 1.98440604477612 5.91497694029851 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.08640185564986 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28