usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.9383333333333 3.43542857142857 4.0527619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 875 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 327 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 327 Number of spheres polar: 91, nonpolar: 212, out of current total: 327 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.50763 36.93303 -2.56328 13.43407 -4.58551 14.03956 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 170 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 142 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 95 Spheres center of coords (x y z): 28.0243217894737 2.27889252631579 4.20988252631579 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.01382361254366 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21