usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 1.25996153846154 29.7721538461538 4.94996153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 907 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 329 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 329 Number of spheres polar: 112, nonpolar: 188, out of current total: 329 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.56618 11.23540 19.77866 39.61644 -4.87545 14.93252 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 100 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 72 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 48 Spheres center of coords (x y z): 1.33350958333333 30.0809633333333 4.791921875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.54211939541692 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 26