usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 54.3694285714286 2.22242857142857 4.44847619047619
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1054
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 335
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 335
Number of spheres polar: 127, nonpolar: 166, out of current total: 335
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 45.93994 64.36185 -4.64500 12.21159 -5.45383 14.44018
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 111
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 78
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 65
Spheres center of coords (x y z): 53.5759024615384 3.98096369230769 5.58509307692308
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.40412111953317
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 21