usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.12 35.3731904761905 4.36095238095238 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1178 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 368 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 367 Number of spheres polar: 150, nonpolar: 171, out of current total: 367 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.14957 36.97097 28.61819 45.33819 -5.35984 14.34216 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 180 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 131 Spheres center of coords (x y z): 26.8171281679389 36.6033389312977 5.49639717557252 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.28665006981394 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21