usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -27.3292380952381 -2.32952380952381 4.77190476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 962 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 337 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 337 Number of spheres polar: 107, nonpolar: 178, out of current total: 337 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.91267 -17.63054 -12.30046 4.44460 -4.30206 14.62623 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 160 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 138 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): -26.8869730578512 -3.74644661157025 5.94169231404958 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.43754142321618 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21