usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.1035714285714 2.44919047619048 4.9997619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 966 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 273 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 273 Number of spheres polar: 85, nonpolar: 152, out of current total: 273 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.26077 36.96009 -3.25842 12.40988 -4.95222 14.97745 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 83 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 67 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 43 Final number of output spheres is: 43 Number of polar spheres: 13 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 21