There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.0764285714286 2.276 4.85257142857143 useligsph not on Starting number of spheres from sph/sph cluster 0: 995 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 625 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 625 Number of spheres polar: 296, nonpolar: 245, out of current total: 625 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.09146 38.96804 -9.69398 14.27509 -7.00893 16.77973 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 145 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 27.0764285714286 2.276 4.85257142857143 Center point: 50 xyz: 27.47988 2.50988 5.26265 After continuity checking, number of spheres is: 55 Final number of output spheres is: 55 Number of polar spheres: 17 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 0