usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.0764285714286 2.276 4.85257142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 995 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 309 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 309 Number of spheres polar: 115, nonpolar: 154, out of current total: 309 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.41916 36.97585 -7.52700 12.16768 -4.12215 14.85240 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 105 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 82 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 59 Spheres center of coords (x y z): 26.846033559322 2.1707093220339 4.82920677966102 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.82169939870601 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 21