usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 27.6253809523809 2.23595238095238 4.53095238095238
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1030
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 330
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 329
Number of spheres polar: 112, nonpolar: 169, out of current total: 329
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.66338 37.37868 -4.99240 12.22272 -5.39178 14.39499
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 98
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 78
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 54
Spheres center of coords (x y z): 27.4447364814815 2.14298537037037 4.62761259259259
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.84364829726353
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 21