usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 27.92040625 1.868875 6.7471875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1537 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 661 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 661 Number of spheres polar: 226, nonpolar: 378, out of current total: 661 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.92848 37.91998 -8.11279 11.86500 -2.77685 16.72356 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 160 Spheres center of coords (x y z): 28.3397951875 1.6922415625 7.5719244375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.29513503476316 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32