usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.4212857142857 2.09971428571429 4.4082380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 905 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 293 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 293 Number of spheres polar: 99, nonpolar: 156, out of current total: 293 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.70393 37.40210 -4.32017 11.81155 -4.58952 14.37553 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 135 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 120 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 87 Spheres center of coords (x y z): 27.2994805747127 1.72541425287356 4.3895791954023 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.78112163589 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 21