There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.0158095238095 2.29728571428571 4.361 useligsph not on Starting number of spheres from sph/sph cluster 0: 868 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 569 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 569 Number of spheres polar: 257, nonpolar: 257, out of current total: 569 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.51173 39.01427 -9.65805 14.28808 -7.32962 16.34078 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 134 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 27.0158095238095 2.29728571428571 4.361 Center point: 23 xyz: 27.35267 2.51800 4.65296 After continuity checking, number of spheres is: 43 Final number of output spheres is: 43 Number of polar spheres: 15 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 0