usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.4494285714286 2.15371428571429 4.35328571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 932 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 290 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 290 Number of spheres polar: 80, nonpolar: 173, out of current total: 290 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.46405 37.40552 -7.76290 12.11560 -5.61698 14.34560 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 81 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 70 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 48 Spheres center of coords (x y z): 27.1659314583333 1.61656541666667 4.371470625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.69476093016961 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 21