usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.009 2.47861904761905 4.25280952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 861 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 293 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 293 Number of spheres polar: 90, nonpolar: 166, out of current total: 293 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.04868 36.94676 -4.86536 12.47741 -5.67711 14.25252 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 99 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 80 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 57 Spheres center of coords (x y z): 27.1749752631579 1.81417298245614 4.39786947368421 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.94823790896223 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 21