usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.009 2.47861904761905 4.25280952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 861 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 293 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 293 Number of spheres polar: 90, nonpolar: 166, out of current total: 293 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.04868 36.94676 -4.86536 12.47741 -5.67711 14.25252 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 149 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 124 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 92 Spheres center of coords (x y z): 27.3057581521739 1.84394771739131 4.42732869565217 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.04796975939295 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 21