usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 28.07384 2.41968 5.806
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1142
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 533
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 533
Number of spheres polar: 150, nonpolar: 347, out of current total: 533
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.52182 38.04504 -5.76416 12.23880 -4.13990 15.80123
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 240
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 200
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 127
Spheres center of coords (x y z): 27.9949233070866 1.66507322834646 6.00218881889764
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.18083253282981
Final number of output spheres is: 60
Number of polar spheres: 7
Number of nonpolar spheres: 51
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 25