usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 27.5265625 2.8321875 5.92725 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1074 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 502 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 502 Number of spheres polar: 164, nonpolar: 295, out of current total: 502 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.36567 37.34031 -4.72217 12.79455 -3.21941 15.90279 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 160 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 110 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 88 Spheres center of coords (x y z): 27.0858946590909 4.07695590909091 6.20032034090909 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.36549706000877 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32