usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 1.27985714285714 31.4997142857143 5.05385714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 988 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 264 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 264 Number of spheres polar: 92, nonpolar: 131, out of current total: 264 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.67443 10.33452 21.51390 38.00676 -4.75605 14.91367 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 93 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 65 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 41 Final number of output spheres is: 41 Number of polar spheres: 10 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 21