usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.7668571428571 2.3387619047619 4.63190476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1010 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 317 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 317 Number of spheres polar: 97, nonpolar: 181, out of current total: 317 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.82689 36.66838 -4.20187 12.32442 -4.51627 14.55794 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 156 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 131 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 88 Spheres center of coords (x y z): 26.3999294318182 2.27395420454546 4.55000909090909 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.80015221742638 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 21