usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.3982857142857 2.23157142857143 4.28666666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 994 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 256 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 256 Number of spheres polar: 79, nonpolar: 122, out of current total: 256 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.05541 37.35949 -4.24897 12.22825 -4.42870 14.27012 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 134 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 120 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 81 Spheres center of coords (x y z): 27.1363048148148 2.11279864197531 4.34079456790123 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.72756713016424 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 21