usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.5929523809524 2.12942857142857 4.47257142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 923 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 248 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 248 Number of spheres polar: 66, nonpolar: 138, out of current total: 248 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.77024 37.43542 -7.81855 12.06073 -4.68332 14.39188 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 133 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 117 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 77 Spheres center of coords (x y z): 27.4074472727273 2.04580142857143 4.69241584415585 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.73936146011585 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21