usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.2030952380952 2.54533333333333 4.09376190476191 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 860 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 323 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 323 Number of spheres polar: 113, nonpolar: 164, out of current total: 323 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.23000 37.00517 -7.43039 12.52057 -5.37308 14.00304 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 93 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 74 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 60 Spheres center of coords (x y z): 26.0268596666667 4.87338533333334 5.35754433333334 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.43603892065621 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21