usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 55.4147916666667 2.28554166666667 4.37383333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1022
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 396
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 396
Number of spheres polar: 128, nonpolar: 230, out of current total: 396
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 45.43316 65.34390 -7.62516 12.27773 -5.56837 14.36919
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 102
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 88
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 66
Spheres center of coords (x y z): 54.1392410606061 4.36946 5.23930121212121
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.08537023375923
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 24