usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.7668571428571 2.3387619047619 4.63190476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1145 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 349 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 349 Number of spheres polar: 129, nonpolar: 173, out of current total: 349 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.08102 36.15726 -4.12871 12.21646 -4.43798 14.62637 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 114 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 77 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 64 Spheres center of coords (x y z): 25.83450390625 4.27681984375 5.71737796875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.28730889036332 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 21