Distance from surface specified: 1.80 There are 21 ligand heavy atoms Ligand center of coords (x y z): 26.7668571428571 2.3387619047619 4.63190476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12545 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9990 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9756 Number of spheres polar: 5160, nonpolar: 3642, out of current total: 9756 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.76980 40.76240 -11.65720 16.33380 -9.35800 18.35620 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1410 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 611 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Final number of output spheres is: 132 Number of polar spheres: 49 Number of nonpolar spheres: 72 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21