usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 54.38925 154.176334166667 26.5508333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1326
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 638
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 638
Number of spheres polar: 259, nonpolar: 287, out of current total: 638
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 44.57050 64.34384 145.52177 164.16866 16.71228 36.54279
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 240
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 202
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 155
Spheres center of coords (x y z): 54.4714969032258 157.787785612903 29.7680190967742
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.05216652911391
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 12