usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 52.8008181818182 153.500819090909 25.2959090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 968 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 329 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 328 Number of spheres polar: 115, nonpolar: 191, out of current total: 328 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.99577 62.79881 146.32001 162.46744 15.48323 35.15022 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 85 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 69 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 26 Final number of output spheres is: 26 Number of polar spheres: 7 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 11