usefragsph not on
There are 16 ligand heavy atoms
Ligand center of coords (x y z): 5.3918125 13.0644375 15.2293125
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 3000
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 473
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 473
Number of spheres polar: 140, nonpolar: 296, out of current total: 473
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.55582 15.37400 3.22249 23.05926 5.26985 25.22590
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 123
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 96
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 74
Spheres center of coords (x y z): 6.37930337837838 14.413845 16.9543639189189
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.19727557487336
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 16