usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 53.2239230769231 154.905153846154 26.0609230769231
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1083
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 458
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 458
Number of spheres polar: 184, nonpolar: 240, out of current total: 458
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.70515 61.79295 146.13815 164.74268 16.25560 36.04949
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 105
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 81
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 72
Spheres center of coords (x y z): 53.1188784722222 158.485251111111 29.3291834722222
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.40809828465148
Final number of output spheres is: 45
Number of polar spheres: 20
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 13