usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 52.3668571428571 153.962785714286 25.9089285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1109 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 452 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 452 Number of spheres polar: 166, nonpolar: 252, out of current total: 452 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.75331 62.32842 146.97559 163.96190 19.48508 35.58691 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 112 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 87 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 80 Spheres center of coords (x y z): 52.191819625 157.322051375 29.058546625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70014360915635 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 14