usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 51.880125 155.074936875 28.0908125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1539 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 730 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 266, nonpolar: 413, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.91187 61.14956 145.11691 165.07147 18.21398 37.99707 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 191 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): 54.6230955555556 154.271600079365 27.3460543650794 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.72228668050219 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 16