usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 52.8722307692308 154.496001538462 26.1443076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 929 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 297 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 297 Number of spheres polar: 123, nonpolar: 146, out of current total: 297 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.99800 61.25694 145.61699 163.97099 16.23621 36.11493 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 117 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 99 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 58 Final number of output spheres is: 58 Number of polar spheres: 12 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 13